|
Id. |
PDB |
Type |
SubType |
ForceField |
Solvent |
Description |
Time (ns) |
Sequence |
|
NAFlex_GC-rich_crowd_Lys_500mM |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked TIP3P AddedSalt |
5,000 |
CACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGC |
|
NAFlex_GC-rich_crowd_Arg_500mM |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked TIP3P AddedSalt |
5,000 |
CACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGC |
|
NAFlex_GC-rich_crowd_neut_500mM |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked TIP3P AddedSalt |
5,000 |
CACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGC |
|
NAFlex_GC-rich_crowd_Na_500mM |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked TIP3P AddedSalt |
5,000 |
CACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGCGCACCGGGCGTGCACGCCCGGTGC |
|
NAFlex_ProtDNA_4f6n |
4F6N |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
2,000 |
CGTATAGACGCGGTGACAC |
|
NAFlex_2mhi |
2MHI |
Rna |
A |
parmBSC0 |
TIP3P |
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral Telomerase |
1,027 |
GGAAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC |
|
NAFlex_lks1 |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
1,000 |
GCCTATAAACGCCTATAA |
|
NAFlex_lks4 |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
1,000 |
GGCGCGCACCACGCGCGG |
|
NAFlex_muAAAC |
NONE |
Dna |
B |
parmBSC0 |
SPCE |
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt |
1,000 |
GCACAAACAAACAAACGC |
|
NAFlex_muGAAC |
NONE |
Dna |
B |
parmBSC0 |
SPCE |
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt |
1,000 |
GCACGAACGAACGAACGC |
|
NAFlex_muTAAC |
NONE |
Dna |
B |
parmBSC0 |
SPCE |
DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt |
1,000 |
GCACTAACTAACTAACGC |
|
NAFlex_miniABC_K_10 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl |
1,000 |
GCTACGCGGATCGAGAGC |
|
NAFlex_miniABC_K_5 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl |
1,000 |
GCATTGGGGACACTACGC |
|
NAFlex_miniABC_Na_10 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl |
1,000 |
GCTACGCGGATCGAGAGC |
|
NAFlex_miniABC_K_12 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl |
1,000 |
GCTGGCATGAAGCGACGC |
|
NAFlex_miniABC_Na_5 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl |
1,000 |
GCATTGGGGACACTACGC |
|
NAFlex_miniABC_NaK_10 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% |
1,000 |
GCTACGCGGATCGAGAGC |
|
NAFlex_miniABC_Na_12 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl |
1,000 |
GCTGGCATGAAGCGACGC |
|
NAFlex_miniABC_NaK_5 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% |
1,000 |
GCATTGGGGACACTACGC |
|
NAFlex_miniABC_NaK_12 |
NONE |
Dna |
B |
parmBSC1 |
SPC/E |
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% |
1,000 |
GCTGGCATGAAGCGACGC |
|
NAFlex_RNA_miniABC_KCl_5 |
NONE |
Rna |
A |
parmBSC0+OL3 |
TIP3P |
RNA-A Duplex Naked TIP3P AddedSalt |
1,000 |
GCAUUGGGGACACUACGC |
|
NAFlex_RNA_miniABC_KCl_10 |
NONE |
Rna |
A |
parmBSC0+OL3 |
TIP3P |
RNA-A Duplex Naked TIP3P AddedSalt |
1,000 |
GCUACGCGGAUCGAGAGC |
|
NAFlex_RNA_miniABC_KCl_12 |
NONE |
Rna |
A |
parmBSC0+OL3 |
TIP3P |
RNA-A Duplex Naked TIP3P AddedSalt |
1,000 |
GCUGGCAUGAAGCGACGC |
|
NAFlex_miniABC_5_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
GCATTGGGGACACTACGC |
|
NAFlex_miniABC_10_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
GCTACGCGGATCGAGAGC |
|
NAFlex_miniABC_12_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
GCTGGCATGAAGCGACGC |
|
NAFlex_2l8q_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
CGCATGCTACGC |
|
NAFlex_2m2c_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
GCGCATGCTACGCG |
|
NAFlex_Circular26_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular29_1_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular29_2_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular30_1_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular30_2_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular31_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular32_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_Circular33_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
TCTCTCTCTCTCTCTCACCACCGCGTACAAGAAAGTTTGTTCTTTCATTTCGCCATACAGCTGCCTCGCGCGTTTCGGTGATATCGGTGAAAACCCTTCCCGTTTCGCTCAAGTTAGTATAAAAAAGCTGAACGAGAAACGTAAAATGATATAAATATCAATATATTAAATTAGATTTTGCATAAAAAACAGACTACATAATACTGTAAAACACAACATATGCAGTCACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCTGAGGCATCTTTCTCAATGAAAGTGTCGGAACTCGGTACATAGGCTTCCGGCTGATAGTAGTCGTATACGACTACTATCAGCCGGAAGCCTATGTACCGAGTTCCGACACTTTCATTGAGAAAGATGCCTCAGCTCTGTTACAGGTCACTAATACCATCTAAGTAGTTGATTCATAGTGACTGCATATGTTGTGTTTTACAGTATTATGTAGTCTGTTTTTTATGCAAAATCTAATTTAATATATTGATATTTATATCATTTTACGTTTCTCGTTCAGCTTTTTTATACTAACTTGAGCGAAACGGGAAGGGTTTTCACCGATATCACCGAAACGCGCGAGGCAGCTGTATGGCGAAATGAAAGAACAAACTTTCTTGTACGCGGTGGTGAGAGAGAGAGAGAGA |
|
NAFlex_YCL020W_CG |
NONE |
Dna |
B |
CGeNArate |
No |
DNA-B Duplex Naked |
1,000 |
ATGGAATCCCAACAATTACATCAAAATCCACGTTCTCTTCATGGTAGCGCCTATGCTTCGGTTACTTCTAAGGAAGTCCCATCAAATCAAGATCCGTTAGCCGTTTCAGCTTCCAATTTACCGGAATTTGATAGAGATTCCACTAAGGTTAATTCTCAACAAGAGACAACACCTGGGACATCAGCTGTTCCAGAGAACCATCATCATGTCTCTCCTCAACCTGCTTCAGTACCACCTCCACAGAATGGACAGTACCAACAGCACGGCATGATGACCCCAAACAAAGCTATGGCCTCTAACTGGGCACATTACCAACAACCGTCTATGATGACGTGTTCACATTATCAAACGTCACCTGCGTATTATCAACCGGACCCACACTATCCGTTGCCACAGTATATCCCACCACTGAGTACTTCCTCACCTGATCCAATCGATTCACAGAATCAACACTCTGAAGTACCTCAAGCTGAGACAAAGGTGAGAAATAACGTCTTACCACCACACACTTTAACATCAGAAGAAAACTTTTCTACATGGGTTAAATTTTACATCAGATTTTTGAAGAACTCTAATCTCGGTGACATCATTCCAAATGACCAGGGTGAAATCAAAAGACAAATGACTTATGAAGAACATGCGTATATATACAATACCTTCCAAGCATTTGCCCCATTTCATTTATTGCCAACATGGGTAAAACAAATTTTAGAAATTAATTATGCTGACATCCTTACAGTCCTTTGTAAAAGTGTGTCCAAAATGCAAACTAACAATCAAGAATTAAAGGATTGGATAGCTCTTGCCAACCTTGAGTACGACGGAAGTACATCTGCTGATACATTTGAAATTACAGTCAGTACGATCATTCAGAGGCTAAAAGAAAACAATATCAATGTTAGCGACAGATTGGCCTGTCAACTAATACTTAAAGGTCTATCCGGTGACTTCAAATACCTACGTAATCAATATCGTACCAAAACGAACATGAAACTTTCCCAATTATTCGCTGAAATTCAGTTAATATATGACGAAAATAAAATCATGAATCTAAATAAACCGTCCCAATACAAACAACACAGCGAATACAAAAATGTTTCTCGCACATCTCCAAACACGACTAACACAAAGGTTACAACTCGTAATTATCAGAGAACAAATAGTTCAAAACCAAGAGCAGCAAAAGCTCACAATATTGCTACATCTAGTAAATTCTCAAGGGTGAACAATGATCACATTAATGAATCAACCGTTTCATCACAATACTTAAGCGATGACAACGAACTTAGTCTTAGGCCAGCAACAGAAAGAATCTAATTAGATTCTTTCTGTTGCTGGCCTAAGACTAAGTTCGTTGTCATCGCTTAAGTATTGTGATGAAACGGTTGATTCATTAATGTGATCATTGTTCACCCTTGAGAATTTACTAGATGTAGCAATATTGTGAGCTTTTGCTGCTCTTGGTTTTGAACTATTTGTTCTCTGATAATTACGAGTTGTAACCTTTGTGTTAGTCGTGTTTGGAGATGTGCGAGAAACATTTTTGTATTCGCTGTGTTGTTTGTATTGGGACGGTTTATTTAGATTCATGATTTTATTTTCGTCATATATTAACTGAATTTCAGCGAATAATTGGGAAAGTTTCATGTTCGTTTTGGTACGATATTGATTACGTAGGTATTTGAAGTCACCGGATAGACCTTTAAGTATTAGTTGACAGGCCAATCTGTCGCTAACATTGATATTGTTTTCTTTTAGCCTCTGAATGATCGTACTGACTGTAATTTCAAATGTATCAGCAGATGTACTTCCGTCGTACTCAAGGTTGGCAAGAGCTATCCAATCCTTTAATTCTTGATTGTTAGTTTGCATTTTGGACACACTTTTACAAAGGACTGTAAGGATGTCAGCATAATTAATTTCTAAAATTTGTTTTACCCATGTTGGCAATAAATGAAATGGGGCAAATGCTTGGAAGGTATTGTATATATACGCATGTTCTTCATAAGTCATTTGTCTTTTGATTTCACCCTGGTCATTTGGAATGATGTCACCGAGATTAGAGTTCTTCAAAAATCTGATGTAAAATTTAACCCATGTAGAAAAGTTTTCTTCTGATGTTAAAGTGTGTGGTGGTAAGACGTTATTTCTCACCTTTGTCTCAGCTTGAGGTACTTCAGAGTGTTGATTCTGTGAATCGATTGGATCAGGTGAGGAAGTACTCAGTGGTGGGATATACTGTGGCAACGGATAGTGTGGGTCCGGTTGATAATACGCAGGTGACGTTTGATAATGTGAACACGTCATCATAGACGGTTGTTGGTAATGTGCCCAGTTAGAGGCCATAGCTTTGTTTGGGGTCATCATGCCGTGCTGTTGGTACTGTCCATTCTGTGGAGGTGGTACTGAAGCAGGTTGAGGAGAGACATGATGATGGTTCTCTGGAACAGCTGATGTCCCAGGTGTTGTCTCTTGTTGAGAATTAACCTTAGTGGAATCTCTATCAAATTCCGGTAAATTGGAAGCTGAAACGGCTAACGGATCTTGATTTGATGGGACTTCCTTAGAAGTAACCGAAGCATAGGCGCTACCATGAAGAGAACGTGGATTTTGATGTAATTGTTGGGATTCCAT |
|
NAFlex_2l8q |
2L8Q |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
590 |
CGCATGCTACGC |
|
NAFlex_2m2c |
2M2C |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
590 |
GCGCATGCTACGCG |
|
NAFlex_TCGA |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
500 |
CGCGTCGACGCG |
|
NAFlex_TCGAhmet |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
500 |
CGCGTXGACGCG |
|
NAFlex_TCGAmet |
NONE |
Dna |
B |
parmBSC1 |
TIP3P |
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral |
500 |
CGCGTXGACGCG |
|
NAFlex_FOXO3_crystal_rep0 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
500 |
GACTATGTAAACAACGC |
|
NAFlex_GC-rich_Arg_25mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Lys_25mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Na_25mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Na_500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Arg_500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Lys_500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Na_1500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Arg_1500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_GC-rich_Lys_1500mM |
NONE |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
400 |
GTCCACGCCC |
|
NAFlex_rna4 |
NONE |
Rna |
A |
parmBSC0 |
TIP3P |
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral |
201 |
GGCGCGCACCACGCGCGG |
|
NAFlex_rna1 |
NONE |
Rna |
A |
parmBSC0 |
TIP3P |
RNA-A Duplex Naked ParmBSC0 TIP3P Electroneutral |
200 |
GCCUAUAAACGCCUAUAA |
|
NAFlex_CG_OG1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCXAACGCACGCXCGCGCTGTCCXCCGCGTTTCXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_OG2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACXGCTTAAACCXACGTACGCGCXGTCCCCCGCXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_5hmC1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_5hmC2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_5mC1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_5mC2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_noalch1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCGAACGCACGCGCGCGCTGTCCGCCGCGTTTCGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_CG_noalch2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACGGCTTAAACCGACGTACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_DZ1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_PP1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_PP2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_SSB1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_SSB2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXTACGTACGCGXTGTCCCCCGXTTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_TG1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_TT1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_TT2 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_TT_noalch1 |
- |
Dna |
B |
parmBSC1 |
TIP3P |
-B Duplex Naked TIP3P Electroneutral |
200 |
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC |
|
NAFlex_FOXA3_crystal_rep0 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_crystal_rep1 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_crystal_rep2 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_crystal_rep3 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_crystal_rep4 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_crystal_rep5 |
1VTN |
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_mut_rep0 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_mut_rep1 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_mut_rep2 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_mut_rep3 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_mut_rep4 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_mut_rep5 |
|
Prot |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_mut_rep0 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_mut_rep5 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_mut_rep4 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_mut_rep3 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_mut_rep2 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_mut_rep1 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXO3_crystal_rep1 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_crystal_rep2 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_crystal_rep3 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_crystal_rep4 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_crystal_rep5 |
2UZK |
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Protein-Nuc SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep0 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep1 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep2 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep3 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep4 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXO3_dna_rep5 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTATGTAAACAACGC |
|
NAFlex_FOXA3_dna_rep3 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_dna_rep4 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_dna_rep0 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_dna_rep1 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_dna_rep2 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |
|
NAFlex_FOXA3_dna_rep5 |
|
Dna |
B |
parmBSC1 |
SPCE |
DNA-B Duplex Naked SPC/E AddedSalt |
50 |
GACTAAGTCAACCACGC |