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Sequence: TCGA
Retrieve MetaTrajectory
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Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
Id.
PDB
Type
SubType
ForceField
Solvent
Description
Time (ns)
Sequence
NAFlex_ProtDNA_2stw
2STW
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
2,000
TCGA
ACTTCCGGC
TCGA
NAFlex_muTCGA
NONE
Dna
B
parmBSC1
SPCE
DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt
1,000
GCGA
TCGA
TCGA
TCGA
GC
NAFlex_miniABC_K_10
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl
1,000
GCTACGCGGA
TCGA
GAGC
NAFlex_miniABC_Na_10
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl
1,000
GCTACGCGGA
TCGA
GAGC
NAFlex_miniABC_NaK_10
NONE
Dna
B
parmBSC1
SPC/E
B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50%
1,000
GCTACGCGGA
TCGA
GAGC
NAFlex_miniABC_10_CG
NONE
Dna
B
CGeNArate
No
DNA-B Duplex Naked
1,000
GCTACGCGGA
TCGA
GAGC
NAFlex_YCL020W_CG
NONE
Dna
B
CGeNArate
No
DNA-B Duplex Naked
1,000
ATGGAATCCCAACAATTACATCAAAATCCACGTTCTCTTCATGGTAGCGCCTATGCTTCGGTTACTTCTAAGGAAGTCCCATCAAATCAAGATCCGTTAGCCGTTTCAGCTTCCAATTTACCGGAATTTGATAGAGATTCCACTAAGGTTAATTCTCAACAAGAGACAACACCTGGGACATCAGCTGTTCCAGAGAACCATCATCATGTCTCTCCTCAACCTGCTTCAGTACCACCTCCACAGAATGGACAGTACCAACAGCACGGCATGATGACCCCAAACAAAGCTATGGCCTCTAACTGGGCACATTACCAACAACCGTCTATGATGACGTGTTCACATTATCAAACGTCACCTGCGTATTATCAACCGGACCCACACTATCCGTTGCCACAGTATATCCCACCACTGAGTACTTCCTCACCTGATCCAA
TCGA
TTCACAGAATCAACACTCTGAAGTACCTCAAGCTGAGACAAAGGTGAGAAATAACGTCTTACCACCACACACTTTAACATCAGAAGAAAACTTTTCTACATGGGTTAAATTTTACATCAGATTTTTGAAGAACTCTAATCTCGGTGACATCATTCCAAATGACCAGGGTGAAATCAAAAGACAAATGACTTATGAAGAACATGCGTATATATACAATACCTTCCAAGCATTTGCCCCATTTCATTTATTGCCAACATGGGTAAAACAAATTTTAGAAATTAATTATGCTGACATCCTTACAGTCCTTTGTAAAAGTGTGTCCAAAATGCAAACTAACAATCAAGAATTAAAGGATTGGATAGCTCTTGCCAACCTTGAGTACGACGGAAGTACATCTGCTGATACATTTGAAATTACAGTCAGTACGATCATTCAGAGGCTAAAAGAAAACAATATCAATGTTAGCGACAGATTGGCCTGTCAACTAATACTTAAAGGTCTATCCGGTGACTTCAAATACCTACGTAATCAATATCGTACCAAAACGAACATGAAACTTTCCCAATTATTCGCTGAAATTCAGTTAATATATGACGAAAATAAAATCATGAATCTAAATAAACCGTCCCAATACAAACAACACAGCGAATACAAAAATGTTTCTCGCACATCTCCAAACACGACTAACACAAAGGTTACAACTCGTAATTATCAGAGAACAAATAGTTCAAAACCAAGAGCAGCAAAAGCTCACAATATTGCTACATCTAGTAAATTCTCAAGGGTGAACAATGATCACATTAATGAATCAACCGTTTCATCACAATACTTAAGCGATGACAACGAACTTAGTCTTAGGCCAGCAACAGAAAGAATCTAATTAGATTCTTTCTGTTGCTGGCCTAAGACTAAGTTCGTTGTCATCGCTTAAGTATTGTGATGAAACGGTTGATTCATTAATGTGATCATTGTTCACCCTTGAGAATTTACTAGATGTAGCAATATTGTGAGCTTTTGCTGCTCTTGGTTTTGAACTATTTGTTCTCTGATAATTACGAGTTGTAACCTTTGTGTTAGTCGTGTTTGGAGATGTGCGAGAAACATTTTTGTATTCGCTGTGTTGTTTGTATTGGGACGGTTTATTTAGATTCATGATTTTATTTTCGTCATATATTAACTGAATTTCAGCGAATAATTGGGAAAGTTTCATGTTCGTTTTGGTACGATATTGATTACGTAGGTATTTGAAGTCACCGGATAGACCTTTAAGTATTAGTTGACAGGCCAATCTGTCGCTAACATTGATATTGTTTTCTTTTAGCCTCTGAATGATCGTACTGACTGTAATTTCAAATGTATCAGCAGATGTACTTCCGTCGTACTCAAGGTTGGCAAGAGCTATCCAATCCTTTAATTCTTGATTGTTAGTTTGCATTTTGGACACACTTTTACAAAGGACTGTAAGGATGTCAGCATAATTAATTTCTAAAATTTGTTTTACCCATGTTGGCAATAAATGAAATGGGGCAAATGCTTGGAAGGTATTGTATATATACGCATGTTCTTCATAAGTCATTTGTCTTTTGATTTCACCCTGGTCATTTGGAATGATGTCACCGAGATTAGAGTTCTTCAAAAATCTGATGTAAAATTTAACCCATGTAGAAAAGTTTTCTTCTGATGTTAAAGTGTGTGGTGGTAAGACGTTATTTCTCACCTTTGTCTCAGCTTGAGGTACTTCAGAGTGTTGATTCTGTGAA
TCGA
TTGGATCAGGTGAGGAAGTACTCAGTGGTGGGATATACTGTGGCAACGGATAGTGTGGGTCCGGTTGATAATACGCAGGTGACGTTTGATAATGTGAACACGTCATCATAGACGGTTGTTGGTAATGTGCCCAGTTAGAGGCCATAGCTTTGTTTGGGGTCATCATGCCGTGCTGTTGGTACTGTCCATTCTGTGGAGGTGGTACTGAAGCAGGTTGAGGAGAGACATGATGATGGTTCTCTGGAACAGCTGATGTCCCAGGTGTTGTCTCTTGTTGAGAATTAACCTTAGTGGAATCTCTATCAAATTCCGGTAAATTGGAAGCTGAAACGGCTAACGGATCTTGATTTGATGGGACTTCCTTAGAAGTAACCGAAGCATAGGCGCTACCATGAAGAGAACGTGGATTTTGATGTAATTGTTGGGATTCCAT
NAFlex_TCGA
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral
500
CGCG
TCGA
CGCG
NAFlex_CG_noalch1
-
Dna
B
parmBSC1
TIP3P
-B Duplex Naked TIP3P Electroneutral
200
XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGC
TCGA
ACGCACGCGCGCGCTGTCCGCCGCGTT
TCGA
CCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_v100t9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGTTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106Bt10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
TGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGATATCTT
NAFlex_v106Ct10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
GAGGATATCTTTGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGT
NAFlex_v106R2t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106R3t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t10
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
100
ATCTTTGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t9
NONE
Dna
B
parmBSC1
TIP3P
DNA-B Duplex Naked Parm99 TIP3P AddedSalt
50
ATCTTTGCGGCAGTTAA
TCGA
ACAAGACCCGTGCAATGCTA
TCGA
CATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT